Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs56221157 | chr4:84448999 | G/A | 6.66E-16 | 403 | 14.9 | 18.27 | 5.17 | KM Plot |
| LGG | rs56225989 | chr2:55656845 | A/G | 3.05E-7 | 398 | 4.6 | 17.77 | 15.17 | KM Plot |
| LGG | rs56276627 | chr20:61488097 | T/G | 4.7E-6 | 389 | 15.7 | 16.12 | 5.5 | KM Plot |
| LGG | rs56300643 | chr9:33982003 | A/T | 6.44E-6 | 404 | 15.37 | 16.38 | 6.13 | KM Plot |
| LGG | rs56327416 | chr6:36056855 | C/A | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs56348543 | chr1:158996579 | A/G | 2.84E-5 | 391 | 14.83 | 18.4 | 9.2 | KM Plot |
| LGG | rs56361961 | chr11:2963823 | G/A | 1.94E-5 | 397 | 15.68 | 14.77 | 15.53 | KM Plot |
| LGG | rs56362075 | chr6:36041137 | A/G | 1.02E-9 | 405 | 15.67 | 15.13 | 6.15 | KM Plot |
| LGG | rs56366087 | chr3:101219392 | A/C | 4.0E-5 | 403 | 15.47 | 14.98 | 11.7 | KM Plot |
| LGG | rs56367723 | chr3:153673562 | C/T | 0 | 405 | 15.15 | 16.77 | 0.23 | KM Plot |
| LGG | rs56374250 | chr10:43323994 | TCCA/T | 0.000233 | 403 | 15.97 | 10.83 | 17.62 | KM Plot |
| LGG | rs56413204 | chr6:36004902 | C/T | 9.5E-10 | 407 | 15.6 | 15.17 | 6.15 | KM Plot |
| LGG | rs56715462 | chr6:36011649 | A/G | 1.07E-9 | 406 | 15.63 | 15.13 | 6.15 | KM Plot |
| LGG | rs56772740 | chr10:7475300 | G/GGCTGTTGCCTC | 2.59E-8 | 401 | 15.35 | 16.27 | 6.63 | KM Plot |
| LGG | rs56839297 | chr2:228076856 | C/T | 0 | 406 | 15.72 | 14.43 | 1.23 | KM Plot |